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Monotone-Bool-Net

Python code for the analysis of Monotone Boolean Functions and Models across Network Topologies.

Usage

Requires uv 

uv sync
The scripts can be run directly using uv 
uv run state_counts --arguments ...
Otherwise, the .venv can be used to import the codes as a python module 
import mbnet as mn
mn.function_name

Documentation

You can access the documentation at hbv.io.in/Monotone-Bool-Net

Citation

If you found this useful please cite the associated manuscript 

@article {Adigwe2025.10.16.682751,
    author = {Adigwe, Sarah and Harshavardhan, BV and Jolly, Mohit Kumar and Gedeon, Tom{\'a}{\v s}},
    title = {Fixed points and multistability in monotone Boolean network models},
    elocation-id = {2025.10.16.682751},
    year = {2025},
    doi = {10.1101/2025.10.16.682751},
    publisher = {Cold Spring Harbor Laboratory},
    URL = {https://www.biorxiv.org/content/early/2025/10/16/2025.10.16.682751},
    eprint = {https://www.biorxiv.org/content/early/2025/10/16/2025.10.16.682751.full.pdf},
    journal = {bioRxiv}
}