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State Count

Counts the number of monotone Boolean models (MBMs) supporting each steady state for the given topologies. Only supported if the in-degree of any of the nodes in the network is <6.

Usage:

state_count [-h] [--topodir TOPODIR] [--output OUTPUT] [topo]
- Count MBMs for the topology EMT6N.topo and save results in Counts_EMT6N.csv. 
uv run state_count --output Counts_EMT6N.csv EMT6N.topo
- Count MBMs for all the topology files in Inputs/Topo/topofiles_4 and save results in Output/Count/4-node_count.csv. If you are counting over multiple topofiles, make sure that they all have same number of nodes. 
uv run state_count --topodir Input/topofiles_4 --output Output/Count/4-node_count.csv

Positional arguments:

  • topo topo file name

Options:

  • -h, --help show this help message and exit
  • --topodir TOPODIR topo file directory
  • --output OUTPUT output file